SE2510411

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1641
  • Brachypodium distachyon
  • SE2510411
  • Tc1/Mariner
  • St3
  • Bd2:8227914-8228172
  • TA
  • TACTCCCTCCGTTCCTAAATATAAGATGTTCTAGCTTTGTCCTAAGTCAAACTTCTTAATGTTTGACCAAGTTTATAG

Secondary structure and sequence

TSD    TIR
5'



3' 
    C    C          A                          C      C    T              A   TAATCTTCCAACATCTA    TCCAAATTAGTTTTGTTAAATCCGTCATGATATATA
TACT CCTC GTTCCTAAAT TAAGATGTTCTAGCTTTGTCCTAAGT AAACTT TTAA GTTTGACCAAGTTT TAG                 GAAC                                    
|||| |||| |||||||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||||| |||                 ||||                                    T
ATGA GGAG CAAGGATTTA ATTCTACAAGATCGAAACGGGATTCA TTTGAA GATT CAAACTGGTTTGAA ATC                 ACGT                                    
    T    A          C                          A      T    T              C   ------------TTCTT    GATTATAAATGTTATAGTTTATTCATATTATGCTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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