SE2550416

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1646
  • Brachypodium distachyon
  • SE2550416
  • PIF/harbinger
  • To11
  • Bd1:65815919-65816092
  • TTA
  • AGGCTCAGTTTGACATTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      A     A      TGAACTGTGCTG    GAACTTAATTTATAATATAC  ----  AAAAAATACACATAAAAATAGGAAAAAAATTGGTTAGCCA
  AGGCTC GTTTG CATTGC            CGCT                    TG    TG                                        
  |||||| ||||| ||||||            ||||                    ||    ||                                         
  TCCGAG CAAAT GTAACG            CGAC                    TT    GC                                        
AT      G     C      ------------    --------------------  AATA  ATTAGAGCAAAAAAGTTGGCGAAAAGTGATAAAAGCACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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