SE2520420

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1650
  • Brachypodium distachyon
  • SE2520420
  • Mutator
  • M29
  • Bd4:11092389-11093054
  • ATTTTGTTT
  • TGAGAGAATTCCATATTTGCCATTGAGAATTTGCCCGTATACCCAAATGCCACTGAGAATTTTCCTGTTCCAAATATGCCACTCAAATTTTGCACGGGGTACAAATATGCCACTACCGTCAGTTGACTGCTAGTTGACCGTTAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTTTGTT                   C             C      AC        C                                           C                        C                          AAAAGATGAAAA   ATTTT       -AT     ----A     ATGTTCCGTTTACAATAAATTACTCATTTTAGAAAACTTAGCTTTTCAAGGTTTTTAGGATGCCCATAATACCATTTCGGAGTAAGTTTCAGCAATAATGATTTTAGCATGAAAAATTGTAAAAATTCAATAGCAC
        TGAGAGAATTCCATATTTG CATTGAGAATTTG CCGTAT  CCAAATGC ACTGAGAATTTTCCTGTTCCAAATATGCCACTCAAATTTTGCA GGGGTACAAATATGCCACTACCGT AGTTGACTGCTAGTTGACCGTTAAGT            GAC     TGCCCCT   GTAGT     TGTTG                                                                                                                                        
        ||||||||||||||||||| ||||||||||||| ||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||            |||     |||||||   |||||     |||||                                                                                                                                        T
        ACTCTCTTAAGGTATAAAC GTGACTCTTAAAC GGTATA  GGTTTACG TGACTCTTAAAGGGACAAGGTTTATACGGTGAGTTTAAAATGT CTCCATGTTTATACGGTGATGGCA TCAACTGGCGATCAACTGGTAATTCA            CTG     ATGGGGA   GGTGT     CCTTT                                                                                                                                        
TTTGTTTT                   A             A      CC        A                                           A                        A                          GTTAAAGTATAA   GCTTT       CCA     CCAGT     TTGTTTTTCTTTGTTCTTTTGATTTTATGGGACAGCCAGAGAAGAGGGAGAGAGAGAGGTGTTTAATACTACTCAAAATCATATAATTAAACGACTTAGATAATTCTTAAAACACTACAATTAATTTTAGTTCCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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