Plant MITE

SE2510426

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1656
Brachypodium distachyon
SE2510426
Tc1/Mariner
St3
Bd4:7177169-7177429
TA
TACTCCCTCCGTTCCTAAATATAAGAAGTCCTAGGTTTGTCCTAAGTCAAACTTCTTCAAGTTTGACCAAGTTTATAGAAAATTATACTAATATCTA

Secondary structure and sequence

TSD TIR

5'

3'

    C                    A        GT                  C                       A     A    A       AAA   C AATGAGTCCAGTATGACTATATATATA
TACT CCTCCGTTCCTAAATATAAG AGTCCTAG  TTGTCCTAAGTCAAACTT TTCAAGTTTGACCAAGTTTATAG AAATT TACT ATATCTA   TAT A                           
|||| |||||||||||||||||||| ||||||||  |||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |||||||   ||| |                            
ATGA GGAGGCAAGGATTTATATTC TCAGGATC  AACAGGATTCAGTTTGAA AAGTTCAAACTGGTTCGAATGTC TTTAA ATGG TGTAGAT   TTG A                           
    T                    A        AA                  T                       C     G    C       --C   - GATTTAATCAAAATAATTTAGACAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510426

TACTCCCTCCGTTCCTAAATATAAGAAGTCCTAGGTTTGTCCTAAGTCAAACTTCTTCAAGTTTGACCAAGTTTATAGAAAATTATACTAATATCTAAAATATCAAATGAGTCCAGTATGACTATATATATAATGACAGATTTAATAAAACTAATTTAGAGTTCTAGATGTCGGTAGAATTTCCTGTAAGCTTGGTCAAACTTGAATAAGTTTGACTTAGGACAAAACTAGGACTACTTATATTTAGGAACGGAGGTAGTA

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