SE2550427

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1657
  • Brachypodium distachyon
  • SE2550427
  • PIF/harbinger
  • To15
  • Bd3:46163904-46164213
  • CTA
  • TAGGGCCTCTTTGATTCGTAGGATTGGAAAAATGAAGG

Secondary structure and sequence

TSD    TIR
5'



3'
C         -         T      ------    AAA      AATAG    AA     AATTGCAATGTC          G TC   ATA  ----   -  - T  GC  --    GTTTGTTTGATTGGACCAAAAGATTTCTTCCAAGAGGTTGGAGTGGATGTAA
 TAGGGCCTC TTTGATTCG AGGATT      GGAA   TGAAGG     GAAA  TGTAG            ATGTCCACTT A  CCT   GG    ATT TT G TT  AT  CAAA                                                    
 ||||||||| ||||||||| ||||||      ||||   ||||||     ||||  |||||            |||||||||| |  |||   ||    ||| || | ||  ||  ||||                                                     
 ATCCCGGAG AAACTAAGT TTCTAA      CCTT   ACTTCC     CTTT  GCATC            TTAAAAAGAT T  GCA   CA    ACT AG A TC  CT  TTTA                                                    
          G         T      AGGTAT    AAA      --GAA    AG     -----------C          - --   -GC  GCAA   A  C -  --  AA    GGATATACTTAAAAAGGATTCCTAAGTAAACATGATGTAAAGTATCTTTTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End