SE2550432

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1662
  • Brachypodium distachyon
  • SE2550432
  • PIF/harbinger
  • To3
  • Bd5:2351749-2351973
  • CTT
  • GGGTGCGTTCTTTTCGGCTTCTAAAACCGGATTCTGCTAGAAGCTGCTCTCACCTAGTTTCATGAAGAAGCCATATCTCAGATTTAGTTAGGCATCCAAAGTAGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTT    GC                AAA     A    G T             A        CA  A       -A     C      A       AT  A  G      AG
   GGGT  GTTCTTTTCGGCTTCT   ACCGG TTCT C AGAAGCTGCTCTC CCTAGTTT  TG AGAAGCC  TATCT AGATTT GTTAGGC  CC AA TAGTTT  
   ||||  ||||||||||||||||   ||||| |||| | ||||||||||||| ||||||||  || |||||||  ||||| |||||| |||||||  || || ||||||  A
   CCCG  CAAGAAAAGCCGAAGG   TGGCC AAGA G TCTTCGACGGGAG GGGTCAAA  AC TCTTTGG  GTGGA TTTAAA TAATCCG  GG TT ATCAAA  
TTC    GT                ATC     A    G C             G        AG  C       CA     -      C       AT  C  G      CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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