Plant MITE

SE2510435

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1665
Brachypodium distachyon
SE2510435
Tc1/Mariner
St11
Bd3:29949898-29950108
TA
TACTCCCTCCGTTCCAAAACACAACTCATATAGATTTGTGCACTTGGACCAAGGCAGCTCTCGTTTCTAGTG

Secondary structure and sequence

TSD TIR

5'

3'

                                     -GTG  C   GA   --AG   G   TCG     AG  TC  -  C CTCATATTGGATTAATAGTAAATG
TACTCCCTCCGTTCCAAAACACAACTCATATAGATTT    CA TTG  CCA    GCA CTC   TTTCT  TG  TG AC A                        
|||||||||||||||||||||||||||||||||||||    || |||  |||    ||| |||   |||||  ||  || || |                        G
ATGAGGGAGGTAAGGTTTTGTGTTGAGTATATCTAAA    GT AAC  GGT    TGT GAG   AAAGA  AC  AT GG C                        
                                     AAGA  A   AA   GTTG   G   TAA     GA  -C  G  - GTGGGCCGGTTATTGATGAGTGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510435

TACTCCCTCCGTTCCAAAACACAACTCATATAGATTTGTGCACTTGGACCAAGGCAGCTCTCGTTTCTAGTGTCTGACCACTCATATTGGATTAATAGTAAATGGATGTGAGTAGTTATTGGCCGGGTGCGGGTACCAAGAGAAAAATGAGGTGTGTTGTGGAACAAATGAGAAAAATCTATATGAGTTGTGTTTTGGAATGGAGGGAGTA

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