SE2550439

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1669
  • Brachypodium distachyon
  • SE2550439
  • PIF/harbinger
  • To3
  • Bd1:50769964-50770189
  • TAA
  • AGGGTGCGTTCTTTTCGGCTTCTAGGACCGGCTTCTCCTAGAAGCTGCCCTCACCTAGCTTCCTGGAGAAGCTGCATCACAAATTTAGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     GC                A             CT        C   CA         C            -   AC      -----     GACTT     A      TAG
  AGGGT  GTTCTTTTCGGCTTCT GGACCGGCTTCTC  AGAAGCTG CCT  CCTAGCTTC TGGAGAAGCTGC ATC  AAATTT     AGCTA     CCAAA TAGTTT   
  |||||  |||||||||||||||| |||||||||||||  |||||||| |||  ||||||||| |||||||||||| |||  ||||||     |||||     ||||| ||||||    
  TCCCG  CAAGAAAAGCCGAAGG CCTGGCCGAAGAG  TCTTCGAC GGA  GGGTCGAAG ACCTCTTCGGCG TGG  TTTAAA     TCGAT     GGTTT ATCAAA   
AA     GT                A             AC        A   TA         A            A   -A      CTAAT     -----     G      CCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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