SE2510441

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1671
  • Brachypodium distachyon
  • SE2510441
  • Tc1/Mariner
  • St3
  • Bd3:45227044-45227298
  • TA
  • TACTCCCTCCTTTCCTAAATATAAGATGTTCTAGCTTTGTCATAAGTCAAACTTAAAGTTTGACCAAGTTTATTGAAAAATCTACCAACATCTGTAACTCTAAATTAGT

Secondary structure and sequence

TSD    TIR
5'



3'
    C     T        TA                    A     C      A                  T    A  C   C           CTC     T   TTCATTCAATCCATCATT
TACT CCTCC TTCCTAAA  TAAGATGTTCTAGCTTTGTC TAAGT AAACTT AAGTTTGACCAAGTTTAT GAAA AT TAC AACATCTGTAA   TAAAT AGT                  
|||| ||||| ||||||||  |||||||||||||||||||| ||||| |||||| |||||||||||||||||| |||| || ||| |||||||||||   ||||| |||                  A
ATGA GGAGG AAGGATTT  ATTTTACAAGATCGAAACAG GTTCA TTTGAA TTCAAACTGGTTCAAATG CTTT TA ATG TTGTAGATGTT   GTTTA TCA                  
    T     C        TA                    G     A      G                  T    A  T   A           ATA     T   TATAATACTTCTATATAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End