SE2520445

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1675
  • Brachypodium distachyon
  • SE2520445
  • Mutator
  • M5
  • Bd2:92141-92357
  • TATTTTTTC
  • GGTTTTGCTATTGAGAAGTCGTCTGTTTTTTAATTAGATATCAATCGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTTTTTC   TTT      GAG                  ----------        CAA     -ATGTTA  C  --    - CTTAATCCAACGATAGCAAGCGAGAGA
         GGT   GCTATT   AAGTCGTCTGTTTTTTAA          TTAGATAT   TCGAC       GC AT  CGGA T                           
         |||   ||||||   ||||||||||||||||||          ||||||||   |||||       || ||  |||| |                           T
         CCA   CGATAA   TTCAGCAGACAAAAAATT          AATTTATA   AGCTG       TT GC  TCTA T                           
TTTTTTATC   CAC      AGA                  TTTTACTCGG        ATC     CAAAGTC  G  AA    A TCTAGTCTCCCAGTAGAGGTAAGAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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