Plant MITE

SE2510449

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1679
Brachypodium distachyon
SE2510449
Tc1/Mariner
St12
Bd3:21788525-21788782
TA
TACTCCCTCCGTTCCAAAATATAGGGCGTATAACTTTTGTTGACTGTCACATTCTAAAGTTTGGCCAAGCTTATAGCAAAAGGAATCAGCATATACAGTGTCAAACTAAGATATTAT

Secondary structure and sequence

TSD TIR

5'

3'

                    A                T      T    --CA       G         G T         A   -        A   A        CTA  A      GAAA       TC
TACTCCCTCCGTTCCAAAAT TAGGGCGTATAACTTT GTTGAC GTCA    TTCTAAA TTTGGCCAA C TATAGCAAA GGA ATCAGCAT TAC GTGTCAAA   AG TATTAT    ATATATT  
|||||||||||||||||||| |||||||||||||||| |||||| ||||    ||||||| ||||||||| | ||||||||| ||| |||||||| ||| ||||||||   || ||||||    |||||||   
ATGAGGGAGGCAAGGTTTTA ATCCCGTATATTGAAA CAACTG CAGT    AAGATTT AAACTGGTT G ATATTGTTT CTT TAGTTGTA ATG TACGGTTT   TC ATAGTA    TATGTAA  
                    C                -      C    TTAA       G         G T         -   A        G   C        -AC  -      -ATC       CA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510449

TACTCCCTCCGTTCCAAAATATAGGGCGTATAACTTTTGTTGACTGTCACATTCTAAAGTTTGGCCAAGCTTATAGCAAAAGGAATCAGCATATACAGTGTCAAACTAAGATATTATGAAAATATATTTCACAATGTATCTAATGATACTCATTTGGCATCGTAGATGTTGATATTCTTTGTTATATGGTTGGTCAAAGTTTAGAAAATTTGACCGTCAACAAAGTTATATGCCCTACATTTTGGAACGGAGGGAGTA

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