Plant MITE

SE2510450

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1680
Brachypodium distachyon
SE2510450
Tc1/Mariner
St5
Bd5:17076514-17076758
TA
TACTCCCTCCATTTCATAAAGGTTAGCGTATTTTGTTTCGTTAAGACAATGTTTTGACCAATGATTACTCTATTAATAT

Secondary structure and sequence

TSD TIR

5'

3'

                        A                        T               T             -ATAACC      ATACAAAA     A   C     AGAA   T
TACTCCCTCCATTTCATAAAGGTT GCGTATTTTGTTTCGTTAAGACAA GTTTTGACCAATGAT ACTCTATTAATAT       TATATG        TTATA TTA TAGAA    CTT 
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||       ||||||        ||||| ||| |||||    ||| T
ATGAGGGAGGTAAAGTGTTTCCAA CGCGTAAAACAAAGCAATTCTGTT CGAAACTGGTTACTA TGAGATAATTATA       ATGTAC        AATAT AGT ATCTT    GAA 
                        C                        C               T             CACAAAA      GTACCTTA     -   T     AGCA   A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510450

TACTCCCTCCATTTCATAAAGGTTAGCGTATTTTGTTTCGTTAAGACAATGTTTTGACCAATGATTACTCTATTAATATATAACCTATATGATACAAAATTATAATTACTAGAAAGAACTTTTAAAGACGATTCTATTGATATAAATTCCATGCATGTAAAAACACATATTAATAGAGTTATCATTGGTCAAAGCCTTGTCTTAACGAAACAAAATGCGCCAACCTTTGTGAAATGGAGGGAGTA

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