SE2520460

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1690
  • Brachypodium distachyon
  • SE2520460
  • Mutator
  • M8
  • Bd3:9321269-9321748
  • TTTATCTTA
  • AGAGTAAATTTCACAGAAACACACTTTTTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTATCTT              A  AA               AGTTGTCTCACAAAACCACGGTTGTTTGTAATAGTCTCACAAAACCATAACTTTTGGGGCAGCTGTTCTCAGAAAACCTAATCTCAATAATTAAGCTAGTTGATGGTTTTTCCGACAACGCGGGGCCACCAATCAGATGCCACGACATCTTCCCCGACCCTTTTTCGACGCCACGTCAGCTGCCTTTGCTCTAATGAC
        AGAGTAAATTTCAC GA  CACACTTTTTGTGGC                                                                                                                                                                                                      
        |||||||||||||| ||  |||||||||||||||                                                                                                                                                                                                       
        TCTCATTTAAAGTG CT  GTGTGAAAAACAGTG                                                                                                                                                                                                      
ATTCTATT              C  TG               TTTTGGTGCCAACAAATATTATCAGAGTGTTTTGGTGTTGAAAACCCCGTCCACCAAAGTCTTTTGGTATTAGAGCTATTAATTTGGCCAACTACCACAAAGGCTATTGGACTCCGGTGGTCAGTCTACGGTGCAGTAGAAGGGGTTGTGCAAAAGCTACGGTGCAGGCAAAGATGGATTGGGTCCTGTAGTGGTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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