SE2520463

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1693
  • Brachypodium distachyon
  • SE2520463
  • Mutator
  • M32
  • Bd1:19872222-19872674
  • TTCTCGGCG
  • TCGGCGAGAGAAGATATCCAGTGCTCCCACCCCTTAGGGTGCTACAGTGCTTCCAACGCACGGTAGCACCCCTAAAAAGTTTTCAAAAATTTCAAAATAAAATGAAAGAGTTCATAAGATATATGTCTACCATATCATAAAGTTTTAACTTCAAATTCATTATACACAGAGAGAAACAAACAAACAAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TTC   G     ---          A  G  C   C             ACA               G        C                A    CA       A   AA A             A          A              C               CA  G           C  -      GGAAACA   A   T   -A    TTTTGTCTTTT
   TCG CGAGA   GAAGATATCC GT CT CCA CCCTTAGGGTGCT   GTGCTTCCAACGCAC GTAGCACC CTAAAAAGTTTTCAAA ATTT  AAATAAA TGA  G GTTCATAAGATAT TGTCTACCAT TCATAAAGTTTTAA TTCAAATTCATTATA  CA AGAGAAACAAA AA ACAAAT       TGA TAG GTC  GAAA           
   ||| |||||   |||||||||| || || ||| |||||||||||||   ||||||||||||||| |||||||| |||||||||||||||| ||||  ||||||| |||  | ||||||||||||| |||||||||| |||||||||||||| |||||||||||||||  || ||||||||||| || ||||||       ||| ||| |||  ||||           T
   AGC GCTCT   CTTCTATAGG CA GA GGT GGGAATCCTACGA   CACGAGGGTTGCGTG CATTGTGG GATTTTTCAAAAGTTT TAAA  TTTATTT ACT  T CAAGTATTCTATA ACAGATGGTA AGTGTTTCAAGGTT AGGTTTAAGTAATAT  GT TCTCTTTGTTT TT TGTTTA       ACT ATC CAG  TTTT           
      G     TCT          G  G  T   A             GAG               G        T                A    AC       A   CA A             C          C              -               AC  A           T  C      AATCTAC   C   -   CG    TCTATTTTTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End