SE2530464

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1694
  • Brachypodium distachyon
  • SE2530464
  • hAT
  • Hat9
  • Bd3:45384811-45385132
  • GCCAGAAC
  • CTATACCTGGGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
GCCAGAA             --AACC      C - -        TTATAAAAGCCCGATGGTCAGACCTGAAGCCCGAGCCTAGCCCGGCCCGAAGCACAGAAAATATGCCATTTAAGCATTAAAATAATTATTTTTGGAATAAATAAATGTATTTTTATAC
       CTATACCTGGGTA      CCGGGC G G GCCGGGCT                                                                                                                      
       |||||||||||||      |||||| | | ||||||||                                                                                                                      C
       GATATGGACCCGT      CGGGCC G G TGGCCGGG                                                                                                                      
CAAGACC             ACCCTC      - G C        TCGGACTTCCGGCCACGTGGCTCGACCCGAGCCCGAAGTGAAAAGACGGGTTTCGGGCAGGGCTTTCGGGCTTTTTTCGGACTTTACCCAAATTAACTCATAAAAAAATCCTTTTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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