Plant MITE

SE2510465

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1695
Brachypodium distachyon
SE2510465
Tc1/Mariner
St3
Bd2:42944569-42944830
TA
TACTCCCTCCGTTCCTAAATGTTTGAAGTCCTAGCTTTGTCCTAAGTCAAACTTCTTAAAGTTTGACCAAGTTTATAGAAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

                              C                       C     G                       ATA  AACATCTAGAATATCAAATAAGTAAACTATGAAAATATATAGCA
TACTCCCTCCGTTCCTAAATGTTTGAAGTC TAGCTTTGTCCTAAGTCAAACTT TTAAA TTTGACCAAGTTTATAGAAAAAT   TC                                            
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||   ||                                             
ATGAGGGAGGCAAGGATTTACAAGCTTCAG GTCGAAACAGGATTCAGTTTGAA AATTT AAACTGGTTCAAGTATCTTTTTA   GA                                            
                              A                       -     G                       ---  TGCTTGTATATATTCTGAAATTTAATCAAAATACCTTAGTTACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510465

TACTCCCTCCGTTCCTAAATGTTTGAAGTCCTAGCTTTGTCCTAAGTCAAACTTCTTAAAGTTTGACCAAGTTTATAGAAAAATATATCAACATCTAGAATATCAAATAAGTAAACTATGAAAATATATAGCATCATTGATTCCATAAAACTAATTTAAAGTCTTATATATGTTCGTAGATTTTTCTATGAACTTGGTCAAAGTTTAAAAGTTTGACTTAGGACAAAGCTGAGACTTCGAACATTTAGGAACGGAGGGAGTA

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