SE2510466

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1696
  • Brachypodium distachyon
  • SE2510466
  • Tc1/Mariner
  • St11
  • Bd1:38649998-38650208
  • TA
  • TACTCCCTCCATTCCACAAAACACCTCATATAGATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A            C             -----------G      TGGACCAAGGCAGCTCTTATTTCTAGTGCCTAACCACTCATACTGGATTAGTACTA
TACTCCCTCC TTCCACAAAACA CTCATATAGATTT            TGCACT                                                        
|||||||||| |||||||||||| |||||||||||||            ||||||                                                         
ATGAGGGAGG AAGGTGTTTTGT GAGTGTATCTAAA            GGTATT                                                        
          C            T             AAAACCAAACAA      ATATCGAGCAAAAAGAGTACCGAGGACGTGGGTCGGTCATTGTCAAGTGTAGGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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