SE2550469

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1699
  • Brachypodium distachyon
  • SE2550469
  • PIF/harbinger
  • To20
  • Bd2:10068199-10068541
  • TAA
  • AGGGCATGTACAAGGAGGTGACGT

Secondary structure and sequence

TSD    TIR
5'



3'
TA             -  -A     C  CAGC         A  CTA      ---------        TGCT            -- GA AG    -      A ----  ATGAGCCTTCTCTTAGCTAAAAGACGATCTCTTCGCAGGAAGGATAAGGCAAAAAAAAGTCAAATTCCCCA
  AGGGCATGTACAA GG  GGTGA GT    CTTTTCTTA GT   TCACGT         AGGATAAT    GATGTGGAAGAG  A  G  AGTT GAAGAA G    GC                                                                       
  ||||||||||||| ||  ||||| ||    ||||||||| ||   ||||||         ||||||||    ||||||||||||  |  |  |||| |||||| |    ||                                                                       T
  TCCCGTACATGTT CC  TTATT CG    GAAAAGAAT CA   AGTGCA         TTCTGTTA    TTATACAACATG  A  T  CTAG AGAGAA T    GA                                                                       
AA             A  AA     C  -ACA         A  CAA      GTAAATCTA        --TT            TT -- --    T      - CACG  ATAGAATATTAATTACGGAACTACTTATTTTAATTAGTTTATTTACAATTCTTTTTCATTTTAGATCATGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End