SE2550473

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1703
  • Brachypodium distachyon
  • SE2550473
  • PIF/harbinger
  • To38
  • Bd3:17765692-17765955
  • TAA
  • AGGCTGGTCATAGTGGGAGTAACATAGCTAGTATCATGTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                           CTA           --    ACCTAGGCATTTGGGTGATGTGGCGATCAATAAATGAAGAAAGAGGTAGTTACTAGTATCATAATATGATACCGGTAACATAAC
  AGGCTGGTCATAGTGGGAGTAACATAG   GTATCATGTAT  TGCC                                                                                    
  |||||||||||||||||||||||||||   |||||||||||  ||||                                                                                    A
  TCCGACCAGTATCACCCTCATTGTATC   CATAGTACGTA  GTAT                                                                                    
AA                           -TA           TA    GATGATATACAATGATGGAAGTATCACGTACCATAGCATCACGCAAGTAAATAACGAAACGTTCTGTGTACTATGGAACCCTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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