Plant MITE

SE2530479

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1709
Brachypodium distachyon
SE2530479
hAT
Hat9
Bd4:2636447-2636763
CTCCCCAG
AGTATACCTGGGCAAACCCCGGGCCGGGCCGGGTTCG

Secondary structure and sequence

TSD TIR

5'

3'

CTCCCC              ----AAC     G  G      G    -          CATAAAAGCCTGACGGCCAAACCTGAAGCCCGAAACACCGAAAATAGGCCATTTGCGCATTAAAATAATTATTTTTGGAATAAATAAATGATTTTTTATACCTA
      AGTATACCTGGGCA       CCCGG CC GGCCGG TTCG GGCCGGGCTT                                                                                                        
      ||||||||||||||       ||||| || |||||| |||| ||||||||||                                                                                                         
      TCATATGGACCCGT       GGGCC GG CCGGCC GGGC GGACTTCGGG                                                                                                        
GACCCC              ACCCACC     -  G      -    C          CTGCAGAGCCCGGCCCGAGCCCGGAGGGAAAAGTCAGGGTTCGGGCCGGGCTTTCGGGCTTTTTTCGGGCTTCACTGATTTTTGCCCATAAAAAATTCCTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530479

CTCCCCAGTATACCTGGGCAAACCCCGGGCCGGGCCGGGTTCGGGCCGGGCTTCATAAAAGCCTGACGGCCAAACCTGAAGCCCGAAACACCGAAAATAGGCCATTTGCGCATTAAAATAATTATTTTTGGAATAAATAAATGATTTTTTATACCTATTTTTCCTTAAAAAATACCCGTTTTTAGTCACTTCGGGCTTTTTTCGGGCTTTCGGGCCGGGCTTGGGACTGAAAAGGGAGGCCCGAGCCCGGCCCGAGACGTCGGGCTTCAGGCCGGGCCGGCCGGGCCGGGCCACCCATGCCCAGGTATACTCCCCAG

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