SE2530481

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1711
  • Brachypodium distachyon
  • SE2530481
  • hAT
  • Hat23
  • Bd1:24637820-24638046
  • CCCGGCCG
  • CGGCCGCAGGGGCGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
CC     --              -  ATGGTAGCTCCCTAGTGCACAGGCACCAAGGTCAAAACAACAATTAGTGCCTAATTATACCTAGTTTTTGATGGTGCACCAGGGATTAGC
  CGGCC  GCAGGGGCGGAGCT GC                                                                                          
  |||||  |||||||||||||| ||                                                                                           
  GCCGG  CGTCCCCGCCTCGA CC                                                                                          
       CC              T  TTTTTTTCATTGGTTCGCGTATTGAAACTGTAAGTGTGTTTTTACATACGTTAAAGTTAGTTTTTAGTAATTTTGACCATAAGACGATGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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