Plant MITE

SE2550499

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1729
Brachypodium distachyon
SE2550499
PIF/harbinger
To39
Bd2:1218491-1218756
TAA
AGACTAGTCATGGTGGG

Secondary structure and sequence

TSD TIR

5'

3'

TA  A  A           AGTAACAAA   GATAACTAAAGTGACAACTAAACAATTTTGATGATGTGTCATATTATTAATGAGGAAAGAGAGAGTTGGGATAACTAGATATGTTACCATCACATCACACTTCTTA
  AG CT GTCATGGTGGG         GGT                                                                                                          
  || || |||||||||||         |||                                                                                                          A
  TC GA CAGTATCACCC         CTC                                                                                                          
AA  C  C           ---------   CTTGTATTCTATCATTGTACATATACAATGATCAGATACAACGATGAAGTTATCACCCAATCAATGTATTTTTGGAGTAAATGATCGAAATATTTAAGTAACATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550499

TAAGACTAGTCATGGTGGGAGTAACAAAGGTGATAACTAAAGTGACAACTAAACAATTTTGATGATGTGTCATATTATTAATGAGGAAAGAGAGAGTTGGGATAACTAGATATGTTACCATCACATCACACTTCTTAACATACAATGAATTTATAAAGCTAGTAAATGAGGTTTTTATGTAACTAACCCACTATTGAAGTAGCAACATAGACTAGTAACATATACATGTTACTATCTTATGTTCCTCCCCACTATGACCAGCCTAA

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