SE2510501

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1731
  • Brachypodium distachyon
  • SE2510501
  • Tc1/Mariner
  • St9
  • scaffold_29:1202-1447
  • TA
  • TACTCCCTCCGTTTGGGTTTATA

Secondary structure and sequence

TSD    TIR
5'



3' 
                       AGTTA    -  A  CG  ATT   A   AAA           ---------      -CA      -----        -    TA        AAAATATATTGTTGCAT
TACTCCCTCCGTTTGGGTTTATA     AGGC CC CG  GA   TTT TGC   ATTTTGACCAA         AAATTA   TTGGTA     GTATGAGA TTCT  CGGCACAA                 
|||||||||||||||||||||||     |||| || ||  ||   ||| |||   |||||||||||         ||||||   ||||||     |||||||| ||||  ||||||||                  
ATGAGGGAGGCAAACCCAAATAT     TCCG GG GT  CT   AAG ACG   TGAAACTGGTT         TTTAAT   AATTAT     TATATTTT AAGA  GTAATCTT                 
                       -----    A  -  AA  -CC   C   GTG           ACTAATAAG      ATA      ATACG        C    TG        TTTCAAAAGGTTCTGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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