Plant MITE

SE2510504

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1734
Brachypodium distachyon
SE2510504
Tc1/Mariner
St5
Bd2:16147959-16148203
TA
TACTCCCTCCATTTCACAAAGGTTGGCGTATTTTGTTTCGTTAAGACAAGGCTTTGACCGATGAA

Secondary structure and sequence

TSD TIR

5'

3'

                                                  G          T   -AACTC            TTTTTTCATAC        TAT    A   ATTC  -   T
TACTCCCTCCATTTCACAAAGGTTGGCGTATTTTGTTTCGTTAAGACAAG CTTTGACCGA GAA      TATTGATATGTG           ATGAAATT   ATCA TGG    GT CTT 
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||      ||||||||||||           ||||||||   |||| |||    || ||| A
ATGAGGGAGGTAAAGTGTTTCTAACCGCATAAAACAAAGCAATTCTGTTC GAAACTGGTT CTT      ATAATTATACAT           TGCTTTGG   TAGT ATC    CA GAA 
                                                  G          -   AATTAA            TCAATATACTA        TAC    A   -GTT  T   A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510504

TACTCCCTCCATTTCACAAAGGTTGGCGTATTTTGTTTCGTTAAGACAAGGCTTTGACCGATGAAAACTCTATTGATATGTGTTTTTTCATACATGAAATTTATATCAATGGATTCGTCTTTAAAAGTACTTGCTAATGATCATGGTTTCGTATCATATAACTTACATATTAATAAATTAATTCTTGGTCAAAGGCTTGTCTTAACGAAACAAAATACGCCAATCTTTGTGAAATGGAGGGAGTA

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