SE2550509

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1739
  • Brachypodium distachyon
  • SE2550509
  • PIF/harbinger
  • To41
  • Bd2:40460958-40461361
  • TAA
  • AGGGCCTCTTTGGATCATAGGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  A     GCAAAAA          GGAAAAACAAA  AT   AATGCCATGCCATTTTGAATACTAGGGATTCAAAACATAGGAATTGTTATAAAAGAGTATTTGGATGTTCCATATGAAAAATATAGGATTTTTTAGATTAGATGGAGTAAGAGAGGAGAGAGATAGAGAGGAGATGCATTGGAACTTTC
  AGGGCCTCTTTGGATCAT GGATT       CATAGGAATA           GG  TGG                                                                                                                                                     
  |||||||||||||||||| |||||       ||||||||||           ||  |||                                                                                                                                                     A
  TCCCGGAGAAACCTAGTA CCTAA       CTTCCTTTTT           AT  CTC                                                                                                                                                     
AA                  C     ----AAA          -----------  --   CTAAGGTTAGGATTCCTTATTAAGGATATCTACGATAAACCTGGTATCCTAAACGTGGTTTCTTTAAAGTACCCTATCCTTTAAAAGGAGGTTTAACACCTCCTTAGGTTCGTACTCCAGACTCCAGATTGGCGAAACTTTGAAAGGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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