SE2550510

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1740
  • Brachypodium distachyon
  • SE2550510
  • PIF/harbinger
  • To33
  • Bd1:31669620-31669845
  • TAA
  • AGGCCCTGTTTGGTTGGGCTTAAAATTGCTTTTTGACTTTTGGCTTATAAGCCACAAAAGCACCTAAATAGTTGCTTTTGACTTTGGCTTTTTGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                            C                                   T  A   T        A           T  TTATACCATCATCTAA
  AGGCCCTGTTTGGTTGGGCTTAAAATTG TTTTTGACTTTTGGCTTATAAGCCACAAAAGCACC AA TAG TGCTTTTG CTTTGGCTTTT GC                
  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||||||| ||                 
  TCCGGGACAAACCAACCTGAATTTTGAC AAAGACTGAAAACCGAATATTCGGTGTTTTCGTGG TT ATC ACGAAAGC GAAACCGAAAA TG                
AA                            A                                   T  A   C        C           C  TAAACTGAACTATAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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