Plant MITE

SE2510516

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1746
Brachypodium distachyon
SE2510516
Tc1/Mariner
St19
Bd3:57376684-57376927
TA
TACTCCCTCTGTTCCTTAAATTAAGGCTTATATTGTTTCCTTTGACCGAGGGTTTGACTAAGGATTACTCCATCAACGTGTG

Secondary structure and sequence

TSD TIR

5'

3'

                       A   T          C           GG           A  AC  C   AAC     ACTTA     T     -TCATA    -CAAACAA   CTTT
TACTCCCTCTGTTCCTTAAATTA GGC TATATTGTTT CTTTGACCGAG  TTTGACTAAGG TT  TC ATC   GTGTG     TGTGA ATAAA      ATCA        GTA    
||||||||||||||||||||||| ||| |||||||||| |||||||||||  ||||||||||| ||  || |||   |||||     ||||| |||||      ||||        |||     
ATGAGGGAGGCAAGGAATTTAAT CCG ATATAACAAA GAAACTGGCTC  AAACTGGTTCT AA  AG TAG   TATAT     ACACT TATTT      TAGT        CAT    
                       C   C          A           GG           A  AC  A   ACA     ATAAA     T     TAACTA    AACCTAAG   AAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510516

TACTCCCTCTGTTCCTTAAATTAAGGCTTATATTGTTTCCTTTGACCGAGGGTTTGACTAAGGATTACTCCATCAACGTGTGACTTATGTGATATAAATCATAATCACAAACAAGTACTTTTGAATACGAATCCAATGATATCAATTTTATTTCACAAAATATATATACAGATAGACAAAATCTTGGTCAAAGGCTCGGTCAAAGAAAACAATATACGCCCTAATTTAAGGAACGGAGGGAGTA

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