Plant MITE

SE2510518

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1748
Brachypodium distachyon
SE2510518
Tc1/Mariner
St3
Bd1:7950791-7951047
TA
TACTACCTCCGTTCCTAAATATAAGAATTTGACTTTATCCTAAGTCAAATTTCTTCAAGTTTGACCAAGTTTATAGCAAAATCTATCAACATCTACA

Secondary structure and sequence

TSD TIR

5'

3'

    A                      --    A    A                   A                  GC         C  C       ACTC     -----    TTTAT       CCA
TACT CCTCCGTTCCTAAATATAAGAA  TTTG CTTT TCCTAAGTCAAATTTCTTC AGTTTGACCAAGTTTATA  AAAATCTAT AA ATCTACA    CAAAT     TAGT     TAATATG   
|||| ||||||||||||||||||||||  |||| |||| ||||||||||||||||||| ||||||||||||||||||  ||||||||| || |||||||    |||||     ||||     |||||||   T
ATGA GGAGGCAAGGATTTATATTCTT  GGAT GAAA AGGATTCAGTTTGAAGAAG TCAAACTGGTTCAAATAT  TTTTAGGTG TT TAGATGT    GTTTA     ATCA     GTTATAT   
    G                      CA    C    C                   C                  GT         A  C       CATA     TTCAT    -TACT       ATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510518

TACTACCTCCGTTCCTAAATATAAGAATTTGACTTTATCCTAAGTCAAATTTCTTCAAGTTTGACCAAGTTTATAGCAAAATCTATCAACATCTACAACTCCAAATTAGTTTTATTAATATGCCATTTATATATTGTCATACTATACTTATTTGATACTGTAGATCTTAGTGGATTTTTGTATAAACTTGGTCAAACTCGAAGAAGTTTGACTTAGGACAAAGCTAGGACTTCTTATATTTAGGAACGGAGGGAGTA

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