SE2520520

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1750
  • Brachypodium distachyon
  • SE2520520
  • Mutator
  • M13
  • Bd4:9992681-9993107
  • CAAATAAAT
  • GAGTAAATTTCGCAAAACCACAGTTTTTGGGATAATCGTGTCGCTGAACCACAGTTAACGAAAAACCTTTCGCAAAACCATACTTTTTTAGTCAAGTTGTCTCAGTCAGCCCGAAACAGGGTGGTTTCACGGTTTTGCTTGATTTTTTACCGGTGGGGTCCACCTGTTGTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAATAAAT                             G    A                         A      T      A        T    T                 C  C      CA         CA          T          C      G     CTG   TA ----   ACGTCGGCCCCGAAAACTTGCGGAAGTGA
         GAGTAAATTTCGCAAAACCACAGTTTTTG GATA TCGTGTCGCTGAACCACAGTTAACG AAAACC TTCGCA AACCATAC TTTT AGTCAAGTTGTCTCAGT AG CCGAAA  GGGTGGTTT  CGGTTTTGCT GATTTTTTAC GGTGGG TCCAC   TTG  C    GCC                             
         ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||| |||||||| |||| ||||||||||||||||| || ||||||  |||||||||  |||||||||| |||||||||| |||||| |||||   |||  |    |||                             G
         CTCATTTAAAGTGTTTTGGTGTCAAAAAC CTGT AGCACAGCGACTTGGTGTCAATTGC TTTTGG AAGTGT TTGGTGTG AAAA TCAGTTCAACAGAGTCA TC GGCTTT  CTCACTAAA  GCCAAAACGA CTAAAGAATG CCACCC GGGTG   AGC  G    GGG                             
TAAATAAAC                             A    C                         C      C      C        T    C                 T  A      CG         CC          C          T      -     ---   TG ACTA   AATCGGACGCTAATTTGGGGGTCGGAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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