Plant MITE

SE2520528

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1758
Brachypodium distachyon
SE2520528
Mutator
M23
Bd1:68718172-68718397
TAAGGGTTA
GGGTTAATTTGATATGCCACTGCAATTTTGGTGAATTCAAAAAACGTCACTGCAATTCTCATCCTTTGAAAAATGCCACTGCAGTGGCATCTTTCAA

Secondary structure and sequence

TSD TIR

5'

3'

 TAA              --                        AA    C       -     CTC   C        A          -----    CA    T   CCCCT   AG
    GGGTTAATTTGATA  TGCCACTGCAATTTTGGTGAATTC  AAAA GTCACTG CAATT   ATC TTTGAAAA TGCCACTGCA     GTGG  TCTT CAA     TGT  
    ||||||||||||||  ||||||||||||||||||||||||  |||| ||||||| |||||   ||| |||||||| ||||||||||     ||||  |||| |||     |||   
    CCCAATTAAACTAT  ACGGTGACGTTAAAACCGCTTAAG  TTTT CGGTGAC GTTAA   TAG AAACTTTT ACGGTGATGT     CATC  AGAA GTT     ACG  
GGTC              AT                        CC    A       C     AAA   A        -          TAATA    TA    -   -TTTT   GT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2520528

TAAGGGTTAATTTGATATGCCACTGCAATTTTGGTGAATTCAAAAAACGTCACTGCAATTCTCATCCTTTGAAAAATGCCACTGCAGTGGCATCTTTCAACCCCTTGTAGTGGCATTTTTTGAAGAATCTACATAATTGTAGTGGCATTTTCAAAAGATAAAAATTGCCAGTGGCATTTTCCGAATTCGCCAAAATTGCAGTGGCATATATCAAATTAACCCCTGG

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