SE2530567

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1797
  • Brachypodium distachyon
  • SE2530567
  • hAT
  • Hat29
  • Bd3:21663958-21664140
  • CCTCCCGG
  • GGCAGTGGCGGAGCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CCTCCC     T       C          TCAAGA  A   CTGTTGCGCCAAATCGCTAGAATTAGCAAGCAAGACCCAGGGCAAATCGTGA
      GGCAG GGCGGAG CAGGATTTCG      CC GGG                                                    
      ||||| ||||||| ||||||||||      || |||                                                    A
      CCGTC CCGCCTC GTCCGGGGTC      CG CGT                                                    
GGCCCT     T       T          ------  T   TCCCGGCGCCGGAACCCCGCGTCTTCCAAAAGAGAAACAATTAAAACCACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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