SE2530568

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1798
  • Brachypodium distachyon
  • SE2530568
  • hAT
  • Hat10
  • Bd1:10795050-10795583
  • CTGGCAGC
  • CTGGCAGCTAGGGGTGGGCAT

Secondary structure and sequence

TSD    TIR
5'



3'
    G   CTA           -----AAA       AAACCGAAA ---  ATCACCGAAGAACCGGAAACCGAAGCCGATTGGACCGAAACCGAAGAACCGTTTAAAACTTCGGTCAGCAAACTCAAAGAACCGAAGTTTGTTCGGTTAATTCGGTCTCTTGCCTCGGTTAACCGAAAAAACCCGAAGAACCGAAGTTCATTGCTGCATCTTTAAAATTTAATGTTTTCATTGCATGTTAGATGATATTTACTCATTACGTGTCTGTGTCACAA
 CTG CAG   GGGGTGGGCAT        AACCGAG         C   CG                                                                                                                                                                                                                                
 ||| |||   |||||||||||        |||||||         |   ||                                                                                                                                                                                                                                A
 GAC GTC   CCCCACCCGTA        TGGGCTT         T   GC                                                                                                                                                                                                                                
C   G   -AG           AGCCAATA       --------- AAA  CAAGCCAAGAAGCCCAAAAGTACTTTAAGCCAAGAAGTTTATACTCCTGGCTTCAATAGAATTTTTAAAACTCTTGGCTTTCAAGCCAAGCCAAAAGCCAAGCCTTGGCTTGATTGGCTTGTAACACAAATGCCGTTTTTTTTATTACTTTTGTTTAAATCAAGTTAGAAGATGAATGTTGTCTTTTATCTAAATTCAATGTGCGTTTTTATTTGTGTATTAGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End