Plant MITE

SE2550585

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1815
Brachypodium distachyon
SE2550585
PIF/harbinger
To21
Bd1:39475095-39475607
TAA
AGGATGGTCATAATGGGGAGTAACTTAA

Secondary structure and sequence

TSD TIR

5'

3'

TA   A                    T   A   TATGTTACTAGCCTAAGTTACTACCTTCATAGTGAGTAGTAACATATATGTAGTGCCATGCATAATGTCATTTATTAGGTTGTAAACTCATATTGCCTTGGTTTGTGTGATGTTATGATAACATATTTAGTTACCACATCCCTCTCTTTCTTCATTTAATACCATGCCATGTCATCAAAATGCCTAGTTGGCATCTTATGTTACTACCTAAATTACTCCCACT
  AGG TGGTCATAATGGGGAGTAAC TAA GTA                                                                                                                                                                                                                               
  ||| |||||||||||||||||||| ||| |||                                                                                                                                                                                                                                
  TCC ACCAGTATTACCCCTCATTG ATT CGA                                                                                                                                                                                                                               
AA   G                    T   -   TCATTGTACGTATACAATGATCCGATACAATGATGAAGTTATCACTCATCATTGTATAAATACCATTGTATTTTTAGAGTAAATAATCGAAATATCTGAGTAACATAGAACCTTTCACACTACACTACTATTGTATAGATCAATGGGGTTGGAAGAGAAAGGAGTAATTATTGTACGGTGTAGAGGGTTTAATGAATCAACTGTCAAATCAATCCGATCAGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2550585

TAAGGATGGTCATAATGGGGAGTAACTTAAAGTATATGTTACTAGCCTAAGTTACTACCTTCATAGTGAGTAGTAACATATATGTAGTGCCATGCATAATGTCATTTATTAGGTTGTAAACTCATATTGCCTTGGTTTGTGTGATGTTATGATAACATATTTAGTTACCACATCCCTCTCTTTCTTCATTTAATACCATGCCATGTCATCAAAATGCCTAGTTGGCATCTTATGTTACTACCTAAATTACTCCCACTATGACTAGCCTAACTAAACTGTCAACTAAGTAATTTGGGAGATGTGGCATGTTATTAATGAGGAAAGAGAAGGTTGGGGTAACTAGATATGTTATCATCACATCACACTTTCCAAGATACAATGAGTCTATAAAGCTAATAAATGAGATTTTTATGTTACCATAAATATGTTACTACTCACTATTGAAGTAGTAACATAGCCTAGTAACATATGCATGTTACTAGCTTATGTTACTCCCCATTATGACCAGCCTAA

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