SE2520589

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1819
  • Brachypodium distachyon
  • SE2520589
  • Mutator
  • M12
  • Bd5:3345990-3346539
  • TTTTAAGAA
  • TTTTAAGAAGAGTAAAATGCACCTGAGGTCCCTATTTTTTCGCGAAGGTGTCAAGTAGGTCTCTAATCTTTGAAAATGCATATTTAGGTCCTCATTGTTTGTTAAGTGGTTCATCCCAGGTCCCTCGACTGTATGCACAGCTCCGGCCGCATGACGTGGCTGCCACCTAGGTTTTGGTCCTACACGTCAGGCGACGACGTGGC

Secondary structure and sequence

TSD    TIR
5'



3'
         A                                 C                 C      C             A                   T            C            A                 G        C                      T               AC        -------    -   CCT     T  - GACA CTGCATGTATTAAAAAATGGAATCTTTTTACCACTCTTGCAGAACTCA
 TTTTAAGA GAGTAAAATGCACCTGAGGTCCCTATTTTTTCG GAAGGTGTCAAGTAGGT TCTAAT TTTGAAAATGCAT TTTAGGTCCTCATTGTTTG TAAGTGGTTCAT CCAGGTCCCTCG CTGTATGCACAGCTCCG CCGCATGA GTGGCTGCCACCTAGGTTTTGG CCTACACGTCAGGCG  GACGTGGC       GCTG CCA   AGGAT AG T    T                                                
 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||  ||||||||       |||| |||   ||||| || |    |                                                 
 AGAATTTT CTCATTTTACGTGGGCTCCAGGGATAAGAAAGC CTTCCACAGTTCATCCA GGATTA AAACTTTTACGTG AAATCCAGGAGTAACAAAC ATTCACCAAGTA GGTCCAGGGAGC GACATACGTGTCGAGGC GGCGTACT CACCGACGGTGGATCCGAAACC GGGTGTGTAGTCCGC  CTGCATCG       AGAA GTC   TTTTG GG G    G                                                
A        -                                 A                 A      A             C                   C            A            G                 -        A                      C               CA        CAACGTT    T   ---     -  G ---- CACACCGTTTACAAGGATTTTTCTTTTTATACCGATGGTTCTCTTCCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End