SE2550591

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1821
  • Brachypodium distachyon
  • SE2550591
  • PIF/harbinger
  • To4
  • Bd4:29423828-29424064
  • TTA
  • AGGCCCTGTTTGTTTGAACTTCAGCTTCAGCTTTTGATGCTTCTACCGCTCTAAAAAGCATATCTCTCCTTTACACATGAAACTGAAAAGCACTTCGAAAGGTGCTTCCCTTCAGAAGCTGCAGGAAGCATCCGGACGCGCTTCTCAGTTTCATGTGTAAACGGAAGAAGTGTTTTTAGAGTGTTAGAAACAGCAAAAACTGAAAAAGAAAACCAAACAAAC

Secondary structure and sequence

TSD    TIR
5'



3'
TT    C  ----         AAC   AGC     C     A  C     C           G   A   C   -                 A    A -    AAA         CTT   A
  AGGC CT    GTTTGTTTG   TTC   TTCAG TTTTG TG TTCTA CGCTCTAAAAA CAT TCT TCC TTTACACATGAAACTGA AAGC C TTCG   GGTGCTTCC   CAG 
  |||| ||    |||||||||   |||   ||||| ||||| || ||||| ||||||||||| ||| ||| ||| ||||||||||||||||| |||| | ||||   |||||||||   ||| A
  TCCG GA    CAAACAAAC   AAG   AAGTC AAAAC AC AAGAT GTGAGATTTTT GTG AGA AGG AAATGTGTACTTTGACT TTCG G AGGC   CTACGAAGG   GTC 
AT    A  AAAA         CAA   AAA     A     G  A     T           -   A   -   C                 C    C C    ---         -AC   G

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End