SE2550615

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1845
  • Brachypodium distachyon
  • SE2550615
  • PIF/harbinger
  • To42
  • Bd4:5868537-5868773
  • TAA
  • AGGTGTGTTTGGGATAGCTCCGGCTCCACAGATTTGGTGGAGCTGATCATTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   -                  -   -------    CA            CT A      AAAA  C  C      GC    ----C    ACTATGGATATTTGGAAGTTTTTTTTTTGTA
  AGG TGTGTTTGGGATAGCTCC GGC       TCCA  GATTTGGTGGAG  G TCATTC    CT CA TTTTTT  GGAG     TGAA                               
  ||| |||||||||||||||||| |||       ||||  ||||||||||||  | ||||||    || || ||||||  ||||     ||||                                
  TCC ACACAAACCCTGTCGAGG CCG       AGGT  CTAAACCACCTC  C AGTAAG    GA GT AAAAAA  CCTC     CGAC                               
AA   T                  T   GAGGTCC    AC            AC C      CATC  A  A      AA    AATCC    ACTAATTAAATCCTTACGTTGTTCTATTTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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