SE2550621

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1851
  • Brachypodium distachyon
  • SE2550621
  • PIF/harbinger
  • To43
  • Bd1:42738997-42739354
  • CCA
  • AGGGCCCGTTTGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CC       -        CCAA   TTTTT      TTCTC    -GAA     TT     T    ATAT  ----     CA  ATTTGGAACAAAGGATAGGAAAGTGTGCATTCCTATGAAACACTGTTGCTACCATGTGATTTCATAGGAAAGAAAACATCCACTTTGAGCTCATTTTTTCAC
  AGGGCCC GTTTGGAA    GCA     ATAGGA     ATAG    AGGAA  GTATA GAAT    TC    CTTTG  CC                                                                                                      
  ||||||| ||||||||    |||     ||||||     ||||    |||||  ||||| ||||    ||    |||||  ||                                                                                                      A
  TCCCGGG CAAACCTT    CGT     TATCCT     TGTC    TCCTT  CATGT CTTA    CC    CGTAC  GT                                                                                                      
GA       G        ---A   ---CC      TTTTA    ATTA     TT     C    ---A  GTAC     --  ACACTTTAGAATATCCCTAACTTTTGTATCCAAACTCTATCTTTTCGGCAAACCTTGCGTCATTGCTTTTAATATCCTTGACACTTACTCTCAACGAAGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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