Plant MITE

SE2510627

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1857
Brachypodium distachyon
SE2510627
Tc1/Mariner
St3
Bd1:68997167-68997444
TA
TACTCCCTCCGTTCCTAAATATAAGAAGTCCTGGCTT

Secondary structure and sequence

TSD TIR

5'

3'

    C        C                       -----    AAGTCAAACTTCTTAAACTTTGACCAAATTTACAGAAAAACCTACCGACATTTGCGACTCTAAATTTGTTTTATTAATTCCACTATGATATATAT
TACT CCTCCGTT CTAAATATAAGAAGTCCTGGCTT     TCCT                                                                                               
|||| |||||||| |||||||||||||||||||||||     ||||                                                                                               T
ATGA GGAGGCAA GATTTATATTCTTCAGGATTGAA     TTCA                                                                                               
    T        A                       TATTC    AGATTGAAACAGGATTCAATTTGAAGAATTTCAAACTTGTTCAAATATATCTTTTTACATAGTAGTTGATCTTATAGCTTATTCATATAATACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510627

TACTCCCTCCGTTCCTAAATATAAGAAGTCCTGGCTTTCCTAAGTCAAACTTCTTAAACTTTGACCAAATTTACAGAAAAACCTACCGACATTTGCGACTCTAAATTTGTTTTATTAATTCCACTATGATATATATTTTCATAATATACTTATTCGATATTCTAGTTGATGATACATTTTTCTATATAAACTTGTTCAAACTTTAAGAAGTTTAACTTAGGACAAAGTTAGAACTTCTTATAAGTTAGGACTTCTTATATTTAGAAACGGAGGTAGTA

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