SE2530633

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1863
  • Brachypodium distachyon
  • SE2530633
  • hAT
  • Hat14
  • Bd4:46521590-46521793
  • ATTGCAAT
  • ATTGCAATCAGGGGCGGACCCAGCCGGGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
           G        C   ----------C     --TTC      GGCCCGCCCCACCCAATAATTTTTAAAATTCCTTTTTACTAGTAGAAATAATTGGGA
ATTGCAATCAG GGCGGACC AGC           GGGTG     GGGTGG                                                         
||||||||||| |||||||| |||           |||||     ||||||                                                          
TAACGTTAGTC CCGCCTGG TTG           CCCAC     TTATGA                                                         
           A        C   AAACATTATAA     CCCAT      GATAAAAATTATAACCCACCCCGATTATGTGACGTCGAGATTAAAAAAAAGATAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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