SE2520635

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1865
  • Brachypodium distachyon
  • SE2520635
  • Mutator
  • M9
  • Bd3:4156710-4157227
  • TTTCTAATA
  • AGGGGGAAATTGGCCACGAGACACCGTTATTTTCCGGCCTTTGCCAAAACACACCGCCGGATTGCGGCTTTGCCCAATACCATTACAATTTCATGGTCATTTGCCACAACACACTTCTTGGCCTAAAACGGAAAGTTTCGTTTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTCTAAT                  AG              C          A                  C G      C  A              CA             C        -   T  C                C -      ---------------       TACCCCAGACCTAAATTTTAAACCTATGATTTTGTGGACCGTTATTATTTGACTTGTGGCTAAATGCTGACCAATTTTGTAATCAAATTA
        AGGGGGAAATTGGCCACG  ACACCGTTATTTTC GGCCTTTGCC AAACACACCGCCGGATTG G CTTTGC CA TACCATTACAATTT  TGGTCATTTGCCA AACACACT TCT GG CTAAAACGGAAAGTTT G TTTTTT               TCCACAA                                                                                          
        ||||||||||||||||||  |||||||||||||| |||||||||| |||||||||||||||||| | |||||| || ||||||||||||||  ||||||||||||| |||||||| ||| || |||||||||||||||| | ||||||               |||||||                                                                                           
        TTCCCTTTTAACCGGTGT  TGTGGCAATAAAAG CCGGAAACGG TTTGTGTGGCGGTCTAAC C GAAACG GT ATGGTAATGTTAAA  ACCAGTAAACGGT TTGTGTGG AGA TC GGTTTTGCCTTTCAAA C GAAGAA               GCGGAAA                                                                                          
GATAATCT                  CG              A          C                  A A      A  C              AC             A        C   -  A                A T      ATAAAGAGACCTACT       ACGAACCCTCCTACTACCAAAACTTGTTTTTTTTAAGATATTAACTTTAAAACCGGGGTTTTCCGTCATGCAATCACAACTGAAACCTGC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End