SE2550645

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1875
  • Brachypodium distachyon
  • SE2550645
  • PIF/harbinger
  • To36
  • Bd1:31414711-31415086
  • TTA
  • AGGGCCTCTTTGATTCACAGGAATTTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT          T           A     ---------TA      -----     ---   TTTCTATTCCTAAGGAAATTTTCTTTTATAGCTTGTTTGATTTGCAGGATTTGAAACCATAGGAATATTTCCTATGGACTAGTTTGCATGCGATTCCAAAGGATAATTTCCATGAGGTCCAACCTCATGGAAAA
  AGGGCCTCTT GATTCACAGGA TTTCA           GGAAAT     TTGGA   GGG                                                                                                                                      
  |||||||||| ||||||||||| |||||           ||||||     |||||   |||                                                                                                                                      T
  TCCCGGAGAA CTAAGTGTCCT AAAGT           TATCCT     TATAC   ACT                                                                                                                                      
AT          -           -     TTTTGTATCTT      TTTTG     TAA   TACAGTACCGTATAACTTAGGATACCTTTAAGTTTTATGTCCTTAGACATCTTCAACAAACTAACGTGGTGACCTTTTTACGTGCTAAACGAATTTCCTAATACACGATGAGTATCAACAGTATCTCTGTCCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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