SE2530650

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1880
  • Brachypodium distachyon
  • SE2530650
  • hAT
  • Hat1
  • Bd4:6573607-6573821
  • CTTGAACG
  • GCAGTGGCGGAGGCAGGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTGAAC    T              ---------------C  GGCCAACCCTTGCCCTGCCCCCCCCCCCCCCCCCCATGATTTCGTATTTTTACTTAAGCCCTTGTATAATC
       GCAG GGCGGAGGCAGGGA                CA                                                                       
       |||| ||||||||||||||                ||                                                                        
       CGTC CCGCCTCCGTCCTT                AG                                                                       
GCAAGTT    C              TTATTATATGCCTCCC  TCTTATCTTCCTACTAAATAATATCTCCTGGTTTCGTATTCTTATACTTTGAGTATACTACTTTAACGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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