SE2520654

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1884
  • Brachypodium distachyon
  • SE2520654
  • Mutator
  • M35
  • Bd2:20376615-20377394
  • ATATAAATA
  • ATAGGAGAAATTGTTCAGGGGACATCGTTATTTTGTGGCCTTTGTCCAAACACACCGTCTGATTGTGGATTTGCTGGGTACCATTACAATTATGTGGCCATTTGCTGAAACACACCGCCAGTCAAAAAACAGAAAGTTGACATTTTCTATGT

Secondary structure and sequence

TSD    TIR
5'



3'
ATATAA   G   -      T    G                  G                C   C      T                         A     C                C   -CA   A      A    G     A    CTA   TTT      ACGCTTTGATTT   -  CAACCTGATCGGTACTCTTGATGATTATGATCTAACTTCCTTTGAGACAAACTGAGACACTAGAAACAGTTGTCAACAGAAAATTCTTCAATAATATTCAAAATATATACTTCTCATTGTATCTAGCTTTCAAAGGGAAAGACAGAGATACCTATCAACATAAAGTAAGAGCAAACAAGAATCACACGACTGTTACTGCGTAATTCGATGCA
      ATA GAG AAATTG TCAG GGACATCGTTATTTTGTG CCTTTGTCCAAACACA CGT TGATTG GGATTTGCTGGGTACCATTACAATT TGTGG CATTTGCTGAAACACA CGC   GTC AAAAAC GAAA TTGAC TTTT   TGT   AGTACT            GTC AG                                                                                                                                                                                                                    
      ||| ||| |||||| |||| |||||||||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |||   ||| |||||| |||| ||||| ||||   |||   ||||||            ||| ||                                                                                                                                                                                                                    C
      TAT CTC TTTAAC GGTC CCTGTGGCAATAAAACAC GGAAACGGGTTTGTGT GCG GTTAAT CCTAAACGACCCATGGTAATGTTAA ACACC GTAAACGACTTTGTGT GCG   CAG TTTTTG CTTT AACTG AAAA   ACG   AACTTA            ATA TA                                                                                                                                                                                                                    
 ATAAA   A   C      C    A                  A                A   A      -                         G     A                A   ATC   G      C    G     A    --A   CAC      ------------   G  GAATGAGGAAGACATTATTAATCGAGAGAGAGGGCACAACAAAGTGATATCAAAACGATAAGCCACAACGTTTCTGTAATAGCTTGTCAAATCCGAACACAACACAACACACTGATGCATGATGATGTACCTAGTATGAGTAACTAAAAAAAACTTTCATATTAGTTGCTTAAATTAATTAACGAGACAAAAACGAATTAAGGCATGAGGTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End