Plant MITE

SE2510660

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1890
Brachypodium distachyon
SE2510660
Tc1/Mariner
St15
Bd1:961363-961580
TA
TACTCCCTCCGTCCCATAATATGAGGCACGCACGCATCCCTGGATCATCAATTTAGCTAACTAAATAT

Secondary structure and sequence

TSD TIR

5'

3'

                           A                  A       AGC   C       ----------A    AAATAATTAAAAAATATATAAGTAGAAAGTT
TACTCCCTCCGTCCCATAATATGAGGC CGCACGCATCCCTGGATC TCAATTT   TAA TAAATAT           AATT                               
||||||||||||||||||||||||||| |||||||||||||||||| |||||||   ||| |||||||           ||||                                
ATGAGGGAGGCAGGGTATTATACTCCG GTGTGCGTAGGGATCTAG AGTTAAA   ATT ATTTATA           TCGT                               
                           C                  G       CTA   A       CGTACAAAAAA    TTTTCATGTGGTAATGTAAGCAATAATTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2510660

TACTCCCTCCGTCCCATAATATGAGGCACGCACGCATCCCTGGATCATCAATTTAGCTAACTAAATATAAATTAAATAATTAAAAAATATATAAGTAGAAAGTTCTTTTAATAACGAATGTAATGGTGTACTTTTTGCTAAAAAACATGCATATTTAATTAATCAAATTGAGGATCTAGGGATGCGTGTGCGCCTCATATTATGGGACGGAGGGAGTA

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