SE2530672

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1902
  • Brachypodium distachyon
  • SE2530672
  • hAT
  • Hat22
  • Bd2:49021576-49022033
  • TGCAAAAT
  • TGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
        AAAT          A       ---C    T  -   - -----------     - GGCCGATTAATCGCTGATCGGCAGACCACCGTGCAGATTAACAGTTATCGCCGCAGTTAATCGCCCAAGCCGATTAATCGGTCTGACAACCGATTAATCGGGATTAATCCGCCGGCCAGCCCCAGCCTTGAAGAGCTTCACTGATGCCTTTGCTTCCTCCCAAGCTGCTGCTGCTCC
    TGCA    CATTGTTCAA AAATCGG    CGAT CA GCG A           TTAAT C                                                                                                                                                                                 
    ||||    |||||||||| |||||||    |||| || ||| |           ||||| |                                                                                                                                                                                  
    ACGT    GTAACAAGTT TTTAGCC    GCCG TT ACG G           CTAAT G                                                                                                                                                                                 
TAAA    ----          C       ATTA    -  G   A CCAGCCCATCC     C CTAATTAGCCAATAGCCTGACTAATTAGCCAAATTAGCCAGCTGGTAATTAGCCAACTGGTAATATGATATATCATATATATTAATATATAACCCGATGAACGGCGTACTCTTGGAACCCTTCCACGTCGGTAGATTTTGTTTAGTTCTCTTCGTTTCCGTAGTCACTTTTACCTAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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