SE2520673

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1903
  • Brachypodium distachyon
  • SE2520673
  • Mutator
  • M6
  • Bd1:8407795-8408328
  • TATCTTATA
  • ATAGAGTGAAATACACCACTAGTCCATAAACTTGGAGCGAATGCACACTTTAGTCCACGAACTCAGAAATGCACACATAAAATCCTAAACTGGTATTAGTGTAACACTTAGGTCCAAAAACGGTTCGGCATGATTAGTTTCGGCCCTGTGG

Secondary structure and sequence

TSD    TIR
5'



3'
TATCTT                                               C                     -            A                       A              C        A  A            C     CAGCTACATCA          -C    CAA      A  T        G   -TCT    C      AA           ---- TA   AAAATTTGACATAATGTTCCGCGGGTTGT
      ATAGAGTGAAATACACCACTAGTCCATAAACTTGGAGCGAATGCACA TTTAGTCCACGAACTCAGAAA TGCACACATAAA TCCTAAACTGGTATTAGTGTAAC CTTAGGTCCAAAAA GGTTCGGC TG TTAGTTTCGGCC TGTGG           GCTTAAGTCG  ATCG   GTTGCT TT GGGTTTTT AGG    TTTT GCAAAA  TTAACATAATT    C  GGA                             
      ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| || |||||||||||| |||||           ||||||||||  ||||   |||||| || |||||||| |||    |||| ||||||  |||||||||||    |  |||                              
      TATCTCATTTTATGTGGTGATTAGGTATTTGAGCCTTGTTTACGTGT AAATCAGGTGCTTGAGTCTTT GCGTGTGTATTT GGGATTTGACCATAATCACGTTG GAATCCAGGTTTTT TCAAGCTG AT AATTAAAGCCGG GTACC           CGAATTCGGT  TGGT   CAACGA GA CCCAAAGA TCC    AAAA CGTTTT  AATTGTTGTTG    T  GTA                             
ATATTC                                               C                     T            C                       A              A        C  C            T     -----------          AC    ACC      C  C        G   CCTC    A      CA           TACG --   TTAATACAATTAACAAACGATTAAGTTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End