SE2520676

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1906
  • Brachypodium distachyon
  • SE2520676
  • Mutator
  • M32
  • Bd4:15858424-15858874
  • GCATGCTCT
  • GCATGC

Secondary structure and sequence

TSD    TIR
5'



3'
          TCTA                      -   ---          A              G       CT                  TT CA                 T                             T      C               CA          CAA           ACAAACATGAATACTG     AATTTTGTCTTT    TT TT   TTT
    GCATGC    GAGAAGATATCCAGTGCTCCCA CCC   GGGTGCTACC TGCTCCCAACGCAC GTAGCAT  CTAAAAAGTTTTTAAAAA  T  AAATAAATTGAGTAGAT CATAAGATATGTGTCTACCATGTCACAAA TTTCAA TCCAAATTTATTATA  TAGAGAGAAA   AAAAGACAAAT                TCAGA            TGTG  T  GTC   
    ||||||    |||||||||||||||||||||| |||   |||||||||| |||||||||||||| |||||||  ||||||||||||||||||  |  ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||  ||||||||||   |||||||||||                |||||            ||||  |  |||   T
    CGTACG    CTCTTCTATAGGTCGCGAGGGT GGG   CCCACGATGG ACGAGGGTTGCGTG CATCGTG  GATTTTTCAAAAGTTTTT  A  TTTATTTAACTCATCTA GTATTCTATACACAGATGGTACAGTGTTT AAAGTT AGGTTTAAGTAATAT  GTTTCTCTTT   TTTTCTGTTTA                AGTCT            ACAC  A  CAG   
ATCT      ----                      C   AAT          C              G       TT                  TT AC                 C                             C      T               AC          ATC           ----------------     ------------    TT TC   CGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End