SE2530677

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1907
  • Brachypodium distachyon
  • SE2530677
  • hAT
  • Hat33
  • Bd4:31049348-31049519
  • ACAATGTT
  • ACAATGTTCAGGGGCGAAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
    A   T        A   CAGCCAAGAAGA      --     AG    GT  TATTGGTGTCAATTTCTAAAAATAAACAACAATTACCAC
 ACA TGT CAGGGGCG AGC            GCGTTG  GGGTC  TTTA  TG                                       
 ||| ||| |||||||| |||            ||||||  |||||  ||||  ||                                       T
 TGT ACA GTCCCCGC TCG            TGCAAC  AGTGA  CCAC  AG                                       
T   A   -        C   -----------A      AG     --    --  TTTACTGTGGTTACTTAAAACGTTTAGAGAGATACGTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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