Plant MITE

SE2530687

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1917
Brachypodium distachyon
SE2530687
hAT
Hat5
Bd2:44864964-44865503
CTTAGCTT
AGCTTTAGGGATGACA

Secondary structure and sequence

TSD TIR

5'

3'

CTT    --T        A  -AT   -  CACATTACCCGCGTACCTGGCGGGTAAATCCCCATTAGGGTACGGGTTTGGGACAGAATTTTAACCTGCGGGTACGCAAATGGAAAATACTTCATACCCATCGGGTAGAGCGGGTATGGGTATGGGAATGCATAACCCTTATCCTTTTACCCGTATAATAAACTCATACATGTGCGATGTGTTGCCGTTTACAGTTTTAAACGATATAGTATTATCTTTTTATGTGTTGTTGTTATTTATAAT
   AGCT   TAGGGATG CA   GGG TA                                                                                                                                                                                                                                                   
   ||||   |||||||| ||   ||| ||                                                                                                                                                                                                                                                    
   TCGA   ATCCCTAC GT   CGT CC                                                                                                                                                                                                                                                   
  T    TTC        C  GGG   T  ATACCCATGCCCAACTCGGAAGGGTATAGAAATGGGCAGGAGAAACTCGAATGGGCAATGGGCATGGGTATAGGCCGTTGCCCATGTTAAAAAAGGGTATGGGCAGTGGGCAATCCTATCGACCCATGGGTGCCCATTTTTATGGGTACTATTTTAAACTAGTTGTTCTTGTACAAGGAATCTTTGCCGTAGTATAAAGAGTTTTGGTGTTGTTAAAACAGTAGTTGTTATGATATAATTGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2530687

CTTAGCTTTAGGGATGACAATGGGTACACATTACCCGCGTACCTGGCGGGTAAATCCCCATTAGGGTACGGGTTTGGGACAGAATTTTAACCTGCGGGTACGCAAATGGAAAATACTTCATACCCATCGGGTAGAGCGGGTATGGGTATGGGAATGCATAACCCTTATCCTTTTACCCGTATAATAAACTCATACATGTGCGATGTGTTGCCGTTTACAGTTTTAAACGATATAGTATTATCTTTTTATGTGTTGTTGTTATTTATAATGTGTTAATATAGTATTGTTGATGACAAAATTGTTGTGGTTTTGAGAAATATGATGCCGTTTCTAAGGAACATGTTCTTGTTGATCAAATTTTATCATGGGTATTTTTACCCGTGGGTACCCAGCTATCCTAACGGGTGACGGGTATGGGAAAAAATTGTACCCGTTGCCGGATATGGGTACGGGTAACGGGTAAGCTCAAAGAGGACGGGTAAAGATATGGGAAGGCTCAACCCGTACCCATACCTTGCGGGTGCCATCCCTACTTAGCTT

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