SE2530701

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1931
  • Brachypodium distachyon
  • SE2530701
  • hAT
  • Hat34
  • Bd1:29888271-29888753
  • GATGGAGC
  • CCATGGTTCGAAAAAGCATCGCTTAAGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
GATGGAG                 ATC   T     ----G   AAA      ATCGTGGGAAAATGCCTCGCTTAGGCTCTAAGCGCCTACTTAAGCGCTGATAAGGCGCATTAGCAAAATTCTCTTCTGCACTGGCGGCTTCTGTCCCTCTCCTGCCTGATTCCCATCAAGGATCGCTCCAATTTCTCCAATTCCCCTTGATTTCCTCCAAGGATCCCGCCAATTTCTCCTAGGCGAGCAAAAGA
       CCATGGTTCGAAAAAGC   GCT AAGCG     GCA   GCTCTG                                                                                                                                                                                                  
       |||||||||||||||||   ||| |||||     |||   ||||||                                                                                                                                                                                                   
       GGTACCAAGTTTTTTCG   CGA TTCGC     GCT   CGCCAC                                                                                                                                                                                                  
GGAGGTA                 ---   -     AATTC   ---      TCCGTGGCGAGTCTCCTTAACTTCGAATTCGCCTCGAATTCGCAAGGCGTGTCTGAGACAAAAACTCTTTTACCACACTAAGAACCTCTTTTGATTCCCCTTAACCTCTTAAACCTCCCCGAGACAACGAGCGGGTCTTTTTTAACCGCCCTAGGAACTTCCTTTAGTTCCCCTTAACCTATTTGACTGCCCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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